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  1. IGB
  2. IGBF-1195

Add soybean RNA-Seq quickload site to IGB

        Details

        • Story Points:
          0.25
        • Sprint:
          Fall 2017, B - Summer 2018

          Description

          Add this data source to IGB:

          http://igbquickload.org/soyseq

          with this mirror:

          http://lorainelab-quickload.scidas.org/soyseq/

          in igbDefaultPrefs.json

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              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1200 remove pollen and cyto QL sites and add http://lorainelab-quickload.scidas.org/rnaseq RNA-Seq QL site

              • Major - Major loss of function.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1206 Duplicate QL sites appear in new versions of IGB with changed default QL sites

              • Major - Major loss of function.
              • Closed

                Activity

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                ann.loraine Ann Loraine added a comment -

                To test:

                1) Visit latest soybean genome (Glycine max)
                2) Open data source named SoySeq

                Note: there is a bug that blocks editing of the data source even though the json is written to allow it:

                { "factoryName": "quickload", "name": "SoySeq", "url": "http://igbquickload.org/soyseq", "loadPriority": "4", "mirror": "http://lorainelab-quickload.scidas.org/soyseq", "isEditable": "true" }

                ,

                Show
                ann.loraine Ann Loraine added a comment - To test: 1) Visit latest soybean genome (Glycine max) 2) Open data source named SoySeq Note: there is a bug that blocks editing of the data source even though the json is written to allow it: { "factoryName": "quickload", "name": "SoySeq", "url": "http://igbquickload.org/soyseq", "loadPriority": "4", "mirror": "http://lorainelab-quickload.scidas.org/soyseq", "isEditable": "true" } ,
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                mason Mason Meyer (Inactive) added a comment -

                My testing confirms that this issue is resolved. The soybean RNA-seq Quickload site has been added. The files in the "SoySeq" folder are opening as expected and are using the the proper back-up URL. There seem to be no side effects as a result of this change, so this story will now be closed.

                Show
                mason Mason Meyer (Inactive) added a comment - My testing confirms that this issue is resolved. The soybean RNA-seq Quickload site has been added. The files in the "SoySeq" folder are opening as expected and are using the the proper back-up URL. There seem to be no side effects as a result of this change, so this story will now be closed.

                  People

                  • Assignee:
                    mason Mason Meyer (Inactive)
                    Reporter:
                    ann.loraine Ann Loraine
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                    Dates

                    • Created:
                      Updated:
                      Resolved: