Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-1315

psl file for smoke testing

        Details

        • Sprint:
          B - Summer 2018

          Description

          Find/make a psl file and pslx to add to the testing set.

            Attachments

              Activity

              Ascending order - Click to sort in descending order
              Hide
              Permalink
              ann.loraine Ann Loraine added a comment -

              Sample PSL file:
              https://bitbucket.org/lorainelab/affyprobesetsforigb/commits/25a81e416495ef15c5ba4989f02ee2349f904925

              Related:

              Also need to test link.psl files that have been bgzip-compressed and tabix-indexed.
              Please review https://bitbucket.org/lorainelab/affyprobesetsforigb
              This code provides command-line tooling for users to create link.psl files for Affymetrix probe sets.
              Samples files are available there.
              For completeness, review "visualizing probe sets" sections in the User's Guide.

              Show
              ann.loraine Ann Loraine added a comment - Sample PSL file: https://bitbucket.org/lorainelab/affyprobesetsforigb/commits/25a81e416495ef15c5ba4989f02ee2349f904925 Related: Also need to test link.psl files that have been bgzip-compressed and tabix-indexed. Please review https://bitbucket.org/lorainelab/affyprobesetsforigb This code provides command-line tooling for users to create link.psl files for Affymetrix probe sets. Samples files are available there. For completeness, review "visualizing probe sets" sections in the User's Guide.
              Hide
              Permalink
              ann.loraine Ann Loraine added a comment -

              Open files.
              Check that they show the right thing.
              Search User's Guide to learn what files should look like in IGB.

              • psl
              • link.psl
              • pslx (ask Dr. Loraine for file)
              Show
              ann.loraine Ann Loraine added a comment - Open files. Check that they show the right thing. Search User's Guide to learn what files should look like in IGB. psl link.psl pslx (ask Dr. Loraine for file)

                People

                • Assignee:
                  aduong Anh Moss (Inactive)
                  Reporter:
                  ieclabau Ivory Blakley (Inactive)
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  2 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: