Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:1
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Sprint:Fall 2018 1, Fall 2018 Sprint 2, Fall 2018 Sprint 3
Description
Users can configure version synonym file or chromosome file. (Preferences->Data Sources).
It is possible that user has selected invalid file which IGB is not able to parse or may not configure the changes. Currently if user selects such file no message is shown to user. User has no way to know if file got configured successfully.
To rectify this, display an error message to user when invalid file is chosen.
Attachments
Activity
Sneha Ramesh Watharkar
Professor asked me to use the same colors as what is being used for "Invalid Data Source".
And for the editable texts, If the user wants to remove the selected file the only option they have is to edit the text box, so we cannot make the fields not editable.
Agreed!
Submit PR
PR merged into master
Tested, works fine.
You could start here for details about how the file should be formatted:
https://wiki.transvar.org/display/igbman/Personal+Synonyms
You might also look a the release test module. It has a functional chromosome.txt file.
That would also give you an idea of how to functionally test if a chromosome file took effect.
https://wiki.transvar.org/display/ITD/Synonyms
The top level of http://igbquickload.org/ has an example of each.
That chromosme.txt file looks oddly short, but I think the synonyms.txt file is a good example.