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      Description

      Currently the ensembl external view does not work, regardless of the genome shown.

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          aloraine Ann Loraine added a comment -

          Can't fix at this time because I can't figure out how to construct the URL needed to retrieve the image to be shown in the tabbed panel interface.

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          aloraine Ann Loraine added a comment - Can't fix at this time because I can't figure out how to construct the URL needed to retrieve the image to be shown in the tabbed panel interface.
          Hide
          aloraine Ann Loraine added a comment -

          Removed Ensembl option from the External View interface, added new testing code, updated comments, and reduced complexity a bit.
          See branch IGBF-2860 on fork https://bitbucket.org/aloraine/integrated-genome-browser.

          Nowlan Freese - could you review?

          Show
          aloraine Ann Loraine added a comment - Removed Ensembl option from the External View interface, added new testing code, updated comments, and reduced complexity a bit. See branch IGBF-2860 on fork https://bitbucket.org/aloraine/integrated-genome-browser . Nowlan Freese - could you review?
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          nfreese Nowlan Freese added a comment - - edited

          Tested on Mac using branch installer.

          The ensembl external view option does not appear. UCSC external view continues to work correctly.

          Recommend pull request.

          Sidenote: I was able to debut the test file. It seems the @Ignore causes the Netbeans debugger to skip over any breakpoints in the tagged method. Need to remove the @Ignore and do a mvn clean install -DskipTests and then debug the test file.

          I also could not get the ensembl image to work. A quick search of the ensembl API was not able to find any obvious solution.

          Show
          nfreese Nowlan Freese added a comment - - edited Tested on Mac using branch installer. The ensembl external view option does not appear. UCSC external view continues to work correctly. Recommend pull request. Sidenote: I was able to debut the test file. It seems the @Ignore causes the Netbeans debugger to skip over any breakpoints in the tagged method. Need to remove the @Ignore and do a mvn clean install -DskipTests and then debug the test file. I also could not get the ensembl image to work. A quick search of the ensembl API was not able to find any obvious solution.
          Hide
          aloraine Ann Loraine added a comment -

          PR is submitted and merged. Master branch installers are built and ready for final testing.

          Show
          aloraine Ann Loraine added a comment - PR is submitted and merged. Master branch installers are built and ready for final testing.
          Hide
          nfreese Nowlan Freese added a comment -

          Tested on Mac using master installer.

          The Ensembl External View tab dropdown option does not appear. UCSC External View continues to work correctly.

          Closing issue.

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          nfreese Nowlan Freese added a comment - Tested on Mac using master installer. The Ensembl External View tab dropdown option does not appear. UCSC External View continues to work correctly. Closing issue.
          Hide
          omarne Omkar Marne added a comment -

          Tested on lnux using master.sh file. The ensemble option is not visible now in the dropdown box.

          Closing the issue

          Show
          omarne Omkar Marne added a comment - Tested on lnux using master.sh file. The ensemble option is not visible now in the dropdown box. Closing the issue

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            • Assignee:
              aloraine Ann Loraine
              Reporter:
              aloraine Ann Loraine
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