Details

    • Story Points:
      2
    • Sprint:
      Winter 2018 Sprint 3, Spring 2019 Sprint 1

      Description

      Typical users need to open and load data from a variety of file formats. Often, files users try to open have problems that prevent IGB from reading them. Currently, users have a hard time understanding and debugging their files because IGB's error messages upon failure to open or load are confusing or inconsistent.

      Let's implement error-handling code that is consistent across all files types and which provides the user with good information about what when wrong when IGB tries to open a file where the format does not fit the expectation.

      1. aligned.sorted.broken.sam
        2 kB
        Nowlan Freese
      2. aligned.sorted.sam
        2 kB
        Nowlan Freese
      3. brokenBed.bed
        0.2 kB
        Riddhi Jagdish Patil
      4. brokenWig-hasTwoFileTypes-actualExample.wig
        3.38 MB
        Nowlan Freese
      1. aligned.sorted.broken.sam_result.PNG
        22 kB
      2. brokenbed_result.PNG
        20 kB
      3. brokenWig-hasTwoFileTypes-actualExample_result.PNG
        22 kB

        Issue Links

          Activity

          Hide
          rpatil14 Riddhi Jagdish Patil added a comment -

          Windows testing successful

          Show
          rpatil14 Riddhi Jagdish Patil added a comment - Windows testing successful
          Hide
          Jill Jill Jenkins (Inactive) added a comment -

          MacOS testing successful.

          Show
          Jill Jill Jenkins (Inactive) added a comment - MacOS testing successful.
          Hide
          svallapu Sai Charan Reddy Vallapureddy added a comment -

          Linux testing successful.

          Show
          svallapu Sai Charan Reddy Vallapureddy added a comment - Linux testing successful.
          Show
          nfreese Nowlan Freese added a comment - I made a few changes to the error formatting: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/757/igbf-1515-2-additional-formatting-of-file/diff
          Hide
          aloraine Ann Loraine added a comment -

          Merged but not yet deployed to "early releases" on Bioviz.

          Show
          aloraine Ann Loraine added a comment - Merged but not yet deployed to "early releases" on Bioviz.

            People

            • Assignee:
              rpatil14 Riddhi Jagdish Patil
              Reporter:
              aloraine Ann Loraine
            • Votes:
              0 Vote for this issue
              Watchers:
              6 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved:

                Development

                  Agile