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  1. IGB
  2. IGBF-1440

Fix soft-clipping glyph render

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Minor
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          0.5
        • Sprint:
          Fall 2018 Sprint 4

          Description

          When viewing soft-clipped reads at the edge of the view, as the user slides the view away from the soft-clips and they should be pushed outside of the view, they are drawn at full length, overlapping the rest of the read. This is an issue with the SoftClippingSeqGlyph class draw logic.

            Attachments

            1. correct2.jpg
              correct2.jpg
              232 kB
            2. wrong1.jpg
              wrong1.jpg
              241 kB
            3. wrong2.jpg
              wrong2.jpg
              238 kB

              Issue Links

              relates to

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-1291 Show soft-clipped bases in BAM files

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Link This issue blocks IGBF-1291 [ IGBF-1291 ]
                nfreese Nowlan Freese made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-1291 [ IGBF-1291 ]
                nfreese Nowlan Freese made changes -
                Link This issue blocks IGBF-1291 [ IGBF-1291 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Attachment correct2.jpg [ 14174 ]
                Attachment wrong1.jpg [ 14175 ]
                Attachment wrong2.jpg [ 14176 ]
                stiwari8 Srishti Tiwari (Inactive) made changes -
                Assignee Srishti Tiwari [ stiwari8 ]
                stiwari8 Srishti Tiwari (Inactive) made changes -
                Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
                Hide
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                stiwari8 Srishti Tiwari (Inactive) added a comment -

                The issue is fixed and the functionality works correctly.

                Show
                stiwari8 Srishti Tiwari (Inactive) added a comment - The issue is fixed and the functionality works correctly.
                stiwari8 Srishti Tiwari (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Testing In Progress [ 10003 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 18146 ] Fall 2019 Workflow Update [ 19966 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 19966 ] Revised Fall 2019 Workflow Update [ 22087 ]

                  People

                  • Assignee:
                    stiwari8 Srishti Tiwari (Inactive)
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: