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  1. IGB
  2. IGBF-1422

Find example data sets where soft clipping reveals polymorphisms

        Details

        • Type: Improvement
        • Status: Closed (View Workflow)
        • Priority: Minor
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          0.5
        • Sprint:
          Fall 2018 Sprint 3

          Description

          Find real soft clip data for testing purposes. The ideal dataset would have the following:
          -paired-end data
          -data with known structural variants
          -preferably aligned in BAM format

          One user who uses soft clipping in their research suggested the following links:
          http://jimb.stanford.edu/giab-resources/
          https://toolbox.google.com/datasetsearch

            Attachments

              Issue Links

              relates to

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-1291 Show soft-clipped bases in BAM files

              • Major - Major loss of function.
              • Closed

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                  People

                  • Assignee:
                    aduong Anh Moss (Inactive)
                    Reporter:
                    aduong Anh Moss (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: